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TGD1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TGD1" - Lipid transfer machine permease in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGD1Lipid transfer machine permease (245 aa)    
Predicted Functional Partners:
TGD2
Permease-like component of an ABC transporter (278 aa)
   
  0.974
NAH1
Cation antiporter (464 aa)
     
   
  0.719
ACK2
Acetate kinase (405 aa)
   
        0.651
EDP04257
PDR-like ABC transporter (1337 aa)
         
  0.544
EDP04156
Predicted protein (1334 aa)
         
  0.544
EDP03608
Predicted protein (630 aa)
         
  0.544
EDO99773
ABC transporter (1379 aa)
         
  0.544
EDO96767
Predicted protein (593 aa)
     
        0.535
EDP06722
Predicted protein (262 aa)
     
        0.521
EDP05063
Predicted protein (321 aa)
     
        0.508
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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