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SMG1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SMG1" - Phosphatidylinositol 3-kinase-related protein kinase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG1Phosphatidylinositol 3-kinase-related protein kinase (4881 aa)    
Predicted Functional Partners:
UPF1
UPF1 protein (800 aa)
     
  0.993
EDO97620
TOR binding partner raptor (289 aa)
     
  0.988
LST8
TOR kinase binding protein (315 aa)
       
  0.982
S6K1
Ribosomal protein S6 kinase (319 aa)
     
  0.975
EDO98188
Predicted protein (75 aa)
     
  0.975
EDP05135
SNF2 superfamily protein (1610 aa)
     
  0.970
EDP01462
Predicted protein (624 aa)
     
  0.964
FKB12
Peptidyl-prolyl cis-trans isomerase, FKBP-type (108 aa)
       
  0.960
FKB42
Peptidyl-prolyl cis-trans isomerase, FKBP-type (1784 aa)
     
  0.959
UPF2
UPF2 protein (301 aa)
     
  0.918
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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