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EFG4 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EFG4" - GTP-binding elongation factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG4GTP-binding elongation factor (441 aa)    
Predicted Functional Partners:
EDP02074
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (381 aa)
     
 
  0.982
EDP05793
Predicted protein (302 aa)
   
 
  0.955
EDP07209
Predicted protein (198 aa)
     
 
  0.948
ERF1
Eukaryotic release factor 1 (438 aa)
     
 
  0.940
RNPH3
3’-5’ exoribonuclease PH component of the exosome (296 aa)
     
 
  0.928
RRP46
Exosome complex exonuclease (242 aa)
     
 
  0.924
XRN1
Single-stranded RNA 5’->3’ exonuclease (171 aa)
     
 
  0.918
CPLD46
DEAD/DEAH-box helicase (485 aa)
     
 
  0.914
RRP40
3’-5’ exonuclease component of the exosome (231 aa)
     
 
  0.912
EDP00886
Predicted protein (393 aa)
     
 
  0.909
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90
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