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EDP08982 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP08982" - HMGB protein in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP08982HMGB protein (513 aa)    
Predicted Functional Partners:
EDP07981
SWI/SNF chromatin remodeling complex protein (642 aa)
     
 
  0.939
ARP4
Actin-related protein (458 aa)
       
 
  0.770
EDO96788
SIN3 component of histone deacetylase complex (542 aa)
     
  0.750
EDP06920
SNF2 superfamily protein (3251 aa)
     
 
  0.724
NAP1
Actin-like protein (380 aa)
       
 
  0.521
ARP7
Actin-related protein (382 aa)
       
 
  0.521
IDA5
Actin (377 aa)
       
 
  0.521
EDP05744
Predicted protein (1002 aa)
     
  0.507
EDP06235
SWI2/SNF2-like protein (1286 aa)
     
  0.449
HFO2
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
       
  0.448
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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