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TRM2C protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRM2C" - tRNA in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM2CtRNA (uracil-5-)-methyltransferase (364 aa)    
Predicted Functional Partners:
EDP04787
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (396 aa)
     
        0.924
EDP03163
Predicted protein (514 aa)
     
        0.863
EDP00683
Predicted protein (516 aa)
     
        0.846
EDP03443
valyl-tRNA synthetase (574 aa)
   
   
  0.844
PUF1
Puf protein (717 aa)
     
        0.820
EDP06418
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (634 aa)
     
        0.805
UTP1
Nucleolar protein, component of the U3 processome (996 aa)
     
        0.796
TRM4
tRNA-(m5C) methyltransferase (392 aa)
     
 
  0.788
EDP01265
Predicted protein (302 aa)
     
        0.785
EDP04019
Predicted protein (137 aa)
     
        0.780
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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