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PDF1B protein (Chlamydomonas reinhardtii) - STRING interaction network
"PDF1B" - Peptide deformylase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDF1BPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins (248 aa)    
Predicted Functional Partners:
MTF1
methionyl-tRNA formyltransferase (374 aa)
 
 
  0.877
MAP1A
Methionine aminopeptidase (383 aa)
   
   
  0.727
MAP1D
Methionine aminopeptidase (337 aa)
   
   
  0.727
OMT1
Oxoglutarate-malate antiporter (553 aa)
   
   
  0.721
PRPL17
Plastid ribosomal protein L17 (173 aa)
     
 
  0.711
MRPL17
Mitochondrial ribosomal protein L17 (136 aa)
     
 
  0.711
EDP05600
DNA topoisomerase-like protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (772 aa)
   
   
  0.710
RPL17
Ribosomal protein L17 (186 aa)
     
      0.659
EDO98475
Predicted protein (1008 aa)
   
   
  0.657
EDP06987
Predicted protein (159 aa)
     
      0.651
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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