STRINGSTRING
EDP09959 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP09959" - RNA helicase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP09959RNA helicase (1203 aa)    
Predicted Functional Partners:
EDP00439
Predicted protein (225 aa)
     
  0.964
UPF2
UPF2 protein (301 aa)
     
  0.964
EDO99548
Predicted protein (261 aa)
     
  0.928
EDO99505
Predicted protein (1212 aa)
     
  0.920
UPF3
UPF3 protein (371 aa)
     
  0.918
RPA70B
Replication protein A, 70 kDa DNA-binding subunit (647 aa)
     
  0.890
EFG3
Elongation factor-like protein (428 aa)
     
  0.861
EDP06286
Predicted protein (533 aa)
   
  0.832
EDP05831
Predicted protein (156 aa)
     
  0.831
EDP02506
ATP-dependent DNA helicase (897 aa)
     
  0.828
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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