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DPD1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"DPD1" - Diaminopimelate decarboxylase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPD1Diaminopimelate decarboxylase (473 aa)    
Predicted Functional Partners:
DAE1
Diaminopimelate epimerase (318 aa)
   
 
  0.992
ASK1
Aspartate kinase (545 aa)
 
  0.967
DPS1
Dihydrodipicolinate synthase (345 aa)
   
  0.967
DPA1
LL-diaminopimelate aminotransferase (441 aa)
   
 
  0.881
SPD1
Spermidine synthase (318 aa)
   
  0.850
AHD1
Bifunctional aspartate kinase/homoserine dehydrogenase (917 aa)
 
 
  0.844
SHKD1
Dehydroquinate dehydratase (554 aa)
         
  0.814
DPR1
Dihydrodipicolinate reductase (315 aa)
           
  0.809
SHKH1
Chorismate synthase (422 aa)
         
  0.800
AIH2
Agmatine iminohydrolase (421 aa)
       
  0.786
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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