STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Collagen type XIII alpha 1 chain. (682 aa)    
Predicted Functional Partners:
TEP1
Telomerase associated protein 1.
    
 0.688
LOC100959601
Uncharacterized protein.
    
 0.688
C1QC
Complement C1q C chain.
  
 
 
0.665
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.660
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.660
P4HA1
Prolyl 4-hydroxylase subunit alpha 1.
    
 0.619
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.619
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
     
 0.617
P4HB
Protein disulfide-isomerase.
    
  0.596
COL6A2
Collagen type VI alpha 2 chain.
  
0.594
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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