STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH3AlkB homolog 3, alpha-ketoglutaratedependent dioxygenase. (294 aa)    
Predicted Functional Partners:
KDM6B
Lysine demethylase 6B.
   
 0.928
KDM6A
Lysine demethylase 6A.
   
 0.928
ASCC3
Activating signal cointegrator 1 complex subunit 3.
    
 0.876
SETD2
SET domain containing 2, histone lysine methyltransferase.
    
 0.843
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 0.842
H2AZ2
Histone H2A; Belongs to the histone H2A family.
   
 0.842
ASCC2
Activating signal cointegrator 1 complex subunit 2.
    
 0.839
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.838
ARID4A
AT-rich interaction domain 4A.
    
 0.836
ARID4B
AT-rich interaction domain 4B.
    
 0.836
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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