GSX2 protein (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GSX2

GS homeobox 2. (304 aa)

Predicted Functional Partners:

PBX1

0.611

PBX4

0.611

PBX2

0.611

PBX3

0.611

FOXG1

0.435

HOXD13

0.415

TBR1

0.408

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXG1	GSX2	ENSOGAP00000016055	ENSOGAP00000013675	Forkhead box G1.	GS homeobox 2.	0.435
FOXG1	TBR1	ENSOGAP00000016055	ENSOGAP00000004407	Forkhead box G1.	T-box brain transcription factor 1.	0.586
GSX2	FOXG1	ENSOGAP00000013675	ENSOGAP00000016055	GS homeobox 2.	Forkhead box G1.	0.435
GSX2	HOXD13	ENSOGAP00000013675	ENSOGAP00000021899	GS homeobox 2.	Homeobox D13.	0.415
GSX2	PBX1	ENSOGAP00000013675	ENSOGAP00000000116	GS homeobox 2.	PBX homeobox 1.	0.611
GSX2	PBX2	ENSOGAP00000013675	ENSOGAP00000014595	GS homeobox 2.	PBX homeobox 2.	0.611
GSX2	PBX3	ENSOGAP00000013675	ENSOGAP00000022557	GS homeobox 2.	PBX homeobox 3.	0.611
GSX2	PBX4	ENSOGAP00000013675	ENSOGAP00000006666	GS homeobox 2.	PBX homeobox 4.	0.611
GSX2	TBR1	ENSOGAP00000013675	ENSOGAP00000004407	GS homeobox 2.	T-box brain transcription factor 1.	0.408
HOXD13	GSX2	ENSOGAP00000021899	ENSOGAP00000013675	Homeobox D13.	GS homeobox 2.	0.415
HOXD13	PBX1	ENSOGAP00000021899	ENSOGAP00000000116	Homeobox D13.	PBX homeobox 1.	0.655
HOXD13	PBX2	ENSOGAP00000021899	ENSOGAP00000014595	Homeobox D13.	PBX homeobox 2.	0.655
HOXD13	PBX3	ENSOGAP00000021899	ENSOGAP00000022557	Homeobox D13.	PBX homeobox 3.	0.655
HOXD13	PBX4	ENSOGAP00000021899	ENSOGAP00000006666	Homeobox D13.	PBX homeobox 4.	0.655
PBX1	GSX2	ENSOGAP00000000116	ENSOGAP00000013675	PBX homeobox 1.	GS homeobox 2.	0.611
PBX1	HOXD13	ENSOGAP00000000116	ENSOGAP00000021899	PBX homeobox 1.	Homeobox D13.	0.655
PBX2	GSX2	ENSOGAP00000014595	ENSOGAP00000013675	PBX homeobox 2.	GS homeobox 2.	0.611
PBX2	HOXD13	ENSOGAP00000014595	ENSOGAP00000021899	PBX homeobox 2.	Homeobox D13.	0.655
PBX3	GSX2	ENSOGAP00000022557	ENSOGAP00000013675	PBX homeobox 3.	GS homeobox 2.	0.611
PBX3	HOXD13	ENSOGAP00000022557	ENSOGAP00000021899	PBX homeobox 3.	Homeobox D13.	0.655