STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDX1Caudal type homeobox 1. (266 aa)    
Predicted Functional Partners:
SMARCA2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.
    
 
 0.489
TFF3
Trefoil factor 3.
      
 0.463
OGG1
8-oxoguanine DNA glycosylase.
      
 0.455
MEIS1
Meis homeobox 1.
    
 
 0.443
MEDAG
Mesenteric estrogen dependent adipogenesis.
      
 0.442
EPC2
Enhancer of polycomb homolog.
      
 0.441
CDH17
Cadherin 17.
   
  
 0.439
POU5F1
POU domain protein.
   
 
 0.424
GLIS2
GLIS family zinc finger 2.
    
 
 0.416
Your Current Organism:
Otolemur garnettii
NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago
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