Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cmk | jk0862 | jk0878 | jk0862 | Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | 0.532 |
cmk | jk0864 | jk0878 | jk0864 | Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Hypothetical protein. | 0.556 |
cmk | ppnK | jk0878 | jk0865 | Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.647 |
cmk | recN | jk0878 | jk0866 | Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Recombination and DNA repair; May be involved in recombinational repair of damaged DNA. | 0.614 |
cobB | nadD | jk0065 | jk0567 | Hypothetical protein; NAD-dependent deacetylase 2 (EC 3.5.1.-); Belongs to the sirtuin family. Class III subfamily. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.930 |
cobB | nadE | jk0065 | jk0474 | Hypothetical protein; NAD-dependent deacetylase 2 (EC 3.5.1.-); Belongs to the sirtuin family. Class III subfamily. | NAD-synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.919 |
cobB | ppnK | jk0065 | jk0865 | Hypothetical protein; NAD-dependent deacetylase 2 (EC 3.5.1.-); Belongs to the sirtuin family. Class III subfamily. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.916 |
dxs | jk0864 | jk1078 | jk0864 | 1-deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Hypothetical protein. | 0.413 |
dxs | ppnK | jk1078 | jk0865 | 1-deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.643 |
jk0861 | jk0862 | jk0861 | jk0862 | Hypothetical protein. | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | 0.989 |
jk0861 | jk0863 | jk0861 | jk0863 | Hypothetical protein. | Hypothetical protein. | 0.773 |
jk0861 | jk0864 | jk0861 | jk0864 | Hypothetical protein. | Hypothetical protein. | 0.843 |
jk0861 | ppnK | jk0861 | jk0865 | Hypothetical protein. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.921 |
jk0861 | recN | jk0861 | jk0866 | Hypothetical protein. | Recombination and DNA repair; May be involved in recombinational repair of damaged DNA. | 0.897 |
jk0862 | cmk | jk0862 | jk0878 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.532 |
jk0862 | jk0861 | jk0862 | jk0861 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Hypothetical protein. | 0.989 |
jk0862 | jk0863 | jk0862 | jk0863 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Hypothetical protein. | 0.773 |
jk0862 | jk0864 | jk0862 | jk0864 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Hypothetical protein. | 0.841 |
jk0862 | ppnK | jk0862 | jk0865 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.899 |
jk0862 | recN | jk0862 | jk0866 | Conserved hypothetical protein; Putative sugar phosphatases of the HAD superfamily. | Recombination and DNA repair; May be involved in recombinational repair of damaged DNA. | 0.911 |
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