STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_9355DEAD-box ATP-dependent RNA helicase 50. (614 aa)    
Predicted Functional Partners:
C2E21_9285
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.763
C2E21_8425
Guanine nucleotide-binding-like NSN1.
   
  0.709
C2E21_7542
Putative rRNA-processing EBP2-like protein.
   
 0.674
C2E21_2394
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.625
C2E21_0465
DNA polymerase V.
   
 0.621
C2E21_2350
DEAD-box ATP-dependent RNA helicase 57; Belongs to the DEAD box helicase family.
  
 
0.619
C2E21_4487
Splicing factor 3B subunit 1.
   
 0.616
C2E21_5647
Aminoacrylate hydrolase.
   
 0.611
C2E21_4789
Putative nucleolar 5-2.
  
 
 0.609
C2E21_7880
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.605
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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