STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_0951tRNA pseudouridine synthase mitochondrial-like. (1667 aa)    
Predicted Functional Partners:
C2E21_8796
H ACA ribonucleo complex subunit 4.
   
 0.759
C2E21_4139
Pseudouridylate synthase transporter.
   
 0.759
C2E21_0278
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.749
C2E21_3341
tRNA (Guanine-N(7)-)-methyltransferase isoform B.
  
 
 0.600
C2E21_7040
50S ribosomal chloroplastic-like; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.587
C2E21_2485
Ribosomal L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.587
C2E21_0373
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
   
 
 0.575
C2E21_8748
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.571
C2E21_8739
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.571
C2E21_5412
DNA-directed RNA polymerases IV and V subunit 3.
  
  
 0.571
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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