STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SQSTM1Sequestosome 1. (532 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor associated factor 6.
    
 0.992
NBR1
NBR1 autophagy cargo receptor.
    
 0.982
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.980
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.972
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.947
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.929
MAP1LC3B
Microtubule associated protein 1 light chain 3 beta.
   
 0.929
TBK1
TANK binding kinase 1.
    
 0.928
KLHL17
Kelch like family member 17.
    
 0.922
KEAP1
Kelch like ECH associated protein 1.
    
 0.922
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.