STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trd_0132Ribulose bisphosphate carboxylase; Identified by match to protein family HMM PF00016; Belongs to the RuBisCO large chain family. (418 aa)    
Predicted Functional Partners:
trd_0131
ygbK domain protein; Identified by match to protein family HMM PF07005.
 
   
 0.954
trd_0134
Conserved hypothetical protein.
 
     0.947
trd_0130
NADP oxidoreductase coenzyme F420-dependent family.
 
   
 0.920
trd_0133
Probable nadh-dependent dyhydrogenase; Identified by match to protein family HMM PF01408.
 
   
 0.915
trd_0040
Conserved hypothetical protein; Identified by match to protein family HMM PF00132.
    
 
 0.759
trd_0135
Putative Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409.
 
     0.718
trd_1049
5-methyltetrahydrofolate S-homocysteine methyltransferase; Identified by match to protein family HMM PF02219; match to protein family HMM PF02574.
   
  
 0.691
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family.
    
 0.577
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
    
 
 0.527
trd_0129
GntR-family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
       0.519
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum DSM 5159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.