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trd_0546 protein (Thermomicrobium roseum) - STRING interaction network
"trd_0546" - dCTP deaminase in Thermomicrobium roseum
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
trd_0546dCTP deaminase; Identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274; Belongs to the dCTP deaminase family (197 aa)    
Predicted Functional Partners:
trd_A0408
Deoxyuridine 5’-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) (MjDUT); Identified by match to protein family HMM PF00692 (174 aa)
   
   
    0.921
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (149 aa)
     
 
  0.912
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1162 aa)
         
    0.900
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1459 aa)
         
    0.900
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (326 aa)
         
    0.900
trd_A0852
Deoxycytidine triphosphate deaminase; Identified by match to protein family HMM TIGR02274 (171 aa)
   
   
 
0.835
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (917 aa)
         
  0.710
trd_0207
DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00573 (693 aa)
   
   
    0.700
dnaN
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (380 aa)
         
  0.673
trd_0847
DNA polymerase III, delta subunit superfamily; Identified by match to protein family HMM PF06144 (344 aa)
   
 
    0.656
Your Current Organism:
Thermomicrobium roseum
NCBI taxonomy Id: 309801
Other names: T. roseum DSM 5159, Thermomicrobium roseum, Thermomicrobium roseum DSM 5159, Thermomicrobium roseum DSM5159
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