Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| trd_0005 | trd_0182 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Conserved hypothetical protein. | 0.816 |
| trd_0005 | trd_0475 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Hypothetical protein; Identified by glimmer; putative. | 0.725 |
| trd_0005 | trd_0607 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Hypothetical protein; Identified by glimmer; putative. | 0.557 |
| trd_0005 | trd_0617 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.714 |
| trd_0005 | trd_1038 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | O-Antigen Polymerase family; Identified by match to protein family HMM PF04932. | 0.647 |
| trd_0005 | trd_1257 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Conserved hypothetical protein. | 0.741 |
| trd_0005 | trd_1371 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Identified by match to protein family HMM PF03734. | 0.762 |
| trd_0005 | trd_1658 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Putative S-layer associated protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00188. | 0.766 |
| trd_0005 | trd_1665 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.687 |
| trd_0005 | trd_1916 | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| trd_0182 | trd_0005 | Conserved hypothetical protein. | Tetratricopeptide repeat family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | 0.816 |
| trd_0182 | trd_0475 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.747 |
| trd_0182 | trd_0607 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.766 |
| trd_0182 | trd_0617 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.774 |
| trd_0182 | trd_1038 | Conserved hypothetical protein. | O-Antigen Polymerase family; Identified by match to protein family HMM PF04932. | 0.757 |
| trd_0182 | trd_1257 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.786 |
| trd_0182 | trd_1371 | Conserved hypothetical protein. | Identified by match to protein family HMM PF03734. | 0.770 |
| trd_0182 | trd_1658 | Conserved hypothetical protein. | Putative S-layer associated protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00188. | 0.781 |
| trd_0182 | trd_1665 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.770 |
| trd_0182 | trd_1916 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.775 |
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