STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_0723Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF03364; match to protein family HMM TIGR01777. (460 aa)    
Predicted Functional Partners:
SRU_1023
NAD dependent epimerase/dehydratase family; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368.
 
    0.806
SRU_0666
Amidinotransferase superfamily; Identified by match to protein family HMM PF02274.
   
    0.588
lacD
Tagatose 1,6-diphosphate aldolase; Identified by match to protein family HMM PF04274.
   
    0.587
gufA
gufA protein; Identified by match to protein family HMM PF02535.
  
    0.537
gufA-2
gufA protein; Identified by match to protein family HMM PF02535.
  
    0.537
SRU_2038
Deoxyribodipyrimidine photolyase-related protein; Identified by match to protein family HMM PF04244.
      0.523
SRU_2045
Iron dependent repressor, putative; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
   
    0.503
SRU_2304
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.497
SRU_2305
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.497
lepB
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
   
    0.475
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.