STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtBPhytoene synthase; Identified by match to protein family HMM PF00494. (307 aa)    
Predicted Functional Partners:
crtI
Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
 0.997
SRU_0743
Phytoene dehydrogenase and related proteins; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
  
 0.925
SRU_1478
Hypothetical protein; Identified by Glimmer2; putative.
  
  
  0.923
crtO
Beta-carotene ketolase; Identified by similarity to GB:BAC88335.1; match to protein family HMM PF01266.
 
  
 0.911
SRU_1223
Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 0.906
idsA
Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 0.906
crtY
Licopene beta-cyclase; Identified by similarity to GB:CAB86388.1.
   
 0.855
SRU_1427
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.848
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.827
SRU_1429
Putative acyltransferase.
  
  
 0.772
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.