STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbxtT-box transcription factor Tb. (468 aa)    
Predicted Functional Partners:
LOC101074260
POU domain protein.
   
 0.674
bmp4
Bone morphogenetic protein 4.
     
 0.625
mixl1
Mix paired-like homeobox.
   
 0.595
sox17
SRY-box transcription factor 17.
    
 0.549
LOC101066339
Eomesodermin homolog b.
  
 
0.543
LOC101076503
Nanog homeobox.
     
 0.543
LOC101069727
Notochord homeobox.
    
 0.538
osbpl7
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.533
prr15l
ATPase family AAA domain containing 4.
      
 0.530
pnpo
Pyridoxamine 5'-phosphate oxidase.
      
 0.530
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.