STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1kProtein phosphatase, Mg2+/Mn2+ dependent, 1K. (373 aa)    
Predicted Functional Partners:
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.888
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.835
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.721
LOC101068225
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.721
LOC101073109
Uncharacterized protein.
     
 0.660
aspdh
Aspartate dehydrogenase domain containing.
      
 0.648
LOC101070310
YY1 associated factor 2.
      
 0.627
YAF2
YY1 associated factor 2.
      
 0.627
dld
Dihydrolipoyl dehydrogenase.
   
 0.577
LOC101065354
Complement 4B (Chido blood group).
   
  
 0.565
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.