STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101069859Lysine (K)-specific demethylase 5Ba. (1474 aa)    
Predicted Functional Partners:
atp5f1c
ATP synthase subunit gamma.
  
 0.930
atp5f1d
ATP synthase F1 subunit delta.
  
 0.930
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.930
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.930
atp5pd
ATP synthase peripheral stalk subunit d.
   
 0.857
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
 0.851
atp5f1e
ATP synthase F1 subunit epsilon.
    
 0.795
incenp
Uncharacterized protein.
   
 0.780
atp6v0b
ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.
  
 0.768
LOC101062972
V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
  
 0.768
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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