STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc58Coiled-coil domain containing 58. (176 aa)    
Predicted Functional Partners:
timm9
Translocase of inner mitochondrial membrane 9 homolog.
   
  
 0.721
vbp1
Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.
   
    0.682
ssbp1
Single-stranded DNA binding protein 1.
   
    0.682
atp5pf
ATP synthase peripheral stalk subunit F6.
   
  
 0.676
zzef1
Zinc finger, ZZ-type with EF hand domain 1.
      
 0.645
mrpl30
Mitochondrial ribosomal protein L30.
   
    0.635
mrps35
Mitochondrial ribosomal protein S35.
   
  
 0.602
mrpl39
Mitochondrial ribosomal protein L39.
   
    0.599
timm21
Translocase of inner mitochondrial membrane 21.
      
 0.566
tmem209
Transmembrane protein 209.
      
 0.566
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.