STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068717Von Hippel-Lindau tumor suppressor. (160 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.995
cul2
Cullin 2; Belongs to the cullin family.
    
 0.978
ubxn7
UBX domain protein 7.
   
  0.942
UBXN7
UBX domain protein 7.
   
  0.942
LOC101070508
Elongin-B isoform X1.
    
 0.938
LOC101068670
Ubiquitin-like domain-containing protein.
    
 0.938
LOC115248454
RING-box protein 1.
    
 0.936
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.936
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.908
LOC101067536
Endothelial PAS domain protein 1b.
    
 0.908
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.