Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_0158 | Avi_0567 | Avi_0158 | Avi_0567 | Hemolysin-type calcium-binding protein. | Secretion protein HlyD family. | 0.495 |
Avi_0158 | Avi_0570 | Avi_0158 | Avi_0570 | Hemolysin-type calcium-binding protein. | ABC transporter nucleotide binding/ATPase protein. | 0.508 |
Avi_0158 | prsD | Avi_0158 | Avi_1114 | Hemolysin-type calcium-binding protein. | Rhiziobicin secretion. | 0.516 |
Avi_0162 | Avi_0567 | Avi_0162 | Avi_0567 | Hemolysin-type calcium-binding protein. | Secretion protein HlyD family. | 0.464 |
Avi_0162 | Avi_0570 | Avi_0162 | Avi_0570 | Hemolysin-type calcium-binding protein. | ABC transporter nucleotide binding/ATPase protein. | 0.458 |
Avi_0162 | prsD | Avi_0162 | Avi_1114 | Hemolysin-type calcium-binding protein. | Rhiziobicin secretion. | 0.533 |
Avi_0566 | Avi_0567 | Avi_0566 | Avi_0567 | Hypothetical protein. | Secretion protein HlyD family. | 0.693 |
Avi_0566 | Avi_0570 | Avi_0566 | Avi_0570 | Hypothetical protein. | ABC transporter nucleotide binding/ATPase protein. | 0.701 |
Avi_0566 | Avi_0571 | Avi_0566 | Avi_0571 | Hypothetical protein. | Conserved hypothetical protein. | 0.491 |
Avi_0567 | Avi_0158 | Avi_0567 | Avi_0158 | Secretion protein HlyD family. | Hemolysin-type calcium-binding protein. | 0.495 |
Avi_0567 | Avi_0162 | Avi_0567 | Avi_0162 | Secretion protein HlyD family. | Hemolysin-type calcium-binding protein. | 0.464 |
Avi_0567 | Avi_0566 | Avi_0567 | Avi_0566 | Secretion protein HlyD family. | Hypothetical protein. | 0.693 |
Avi_0567 | Avi_0570 | Avi_0567 | Avi_0570 | Secretion protein HlyD family. | ABC transporter nucleotide binding/ATPase protein. | 0.972 |
Avi_0567 | Avi_0571 | Avi_0567 | Avi_0571 | Secretion protein HlyD family. | Conserved hypothetical protein. | 0.536 |
Avi_0567 | Avi_2686 | Avi_0567 | Avi_2686 | Secretion protein HlyD family. | Outer membrane secretion protein. | 0.757 |
Avi_0567 | Avi_3863 | Avi_0567 | Avi_3863 | Secretion protein HlyD family. | ABC transporter nucleotide binding/ATPase protein. | 0.818 |
Avi_0567 | macB | Avi_0567 | Avi_1296 | Secretion protein HlyD family. | ABC transporter nucleotide binding/ATPase protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.834 |
Avi_0567 | nodT | Avi_0567 | Avi_6027 | Secretion protein HlyD family. | Nodulation protein T precursor. | 0.705 |
Avi_0567 | prsD | Avi_0567 | Avi_1114 | Secretion protein HlyD family. | Rhiziobicin secretion. | 0.623 |
Avi_0570 | Avi_0158 | Avi_0570 | Avi_0158 | ABC transporter nucleotide binding/ATPase protein. | Hemolysin-type calcium-binding protein. | 0.508 |
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