STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_2065ABC transporter membrane spanning protein (amino acid). (267 aa)    
Predicted Functional Partners:
Avi_2064
ABC transporter membrane spanning protein (amino acid).
 
 
0.933
Avi_2066
ABC transporter substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
 0.931
nocP1
ABC transporter nucleotide binding/ATPase protein.
  
 0.871
glnH
ABC transporter substrate binding protein (glutamine); Belongs to the bacterial solute-binding protein 3 family.
 
 0.834
Avi_5014
ABC transporter substrate binding protein (amino acid).
 
 0.801
Avi_5967
ABC-type amino acid transport/signal transduction periplasmic protein.
 
 0.785
Avi_5173
ABC transporter nucleotide binding/ATPase protein (amino acid).
   
 0.772
Avi_5456
ABC transporter nucleotide binding/ATPase protein (amino acid).
   
 0.771
Avi_5964
ABC transporter nucleotide binding/ATPase protein.
   
 0.769
Avi_2554
ABC transporter nucleotide binding/ATPase protein (amino acid).
   
 0.761
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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