STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhtDihydropyrimidinase. (484 aa)    
Predicted Functional Partners:
Avi_3449
Dihydroorotate dihydrogenase protein.
 
 0.994
amaB
N-carbamoyl-beta-alanine amidohydrolase.
 
 
 0.993
Avi_3448
Glutamate synthase beta chain protein.
 
 
 0.976
pyrB
Aspartate carbamoyl transferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.959
carB
Carbamoylphosphate synthase large subunit; Belongs to the CarB family.
 
 
 0.868
carA
Carbamoyl phosphate synthetase small chain; Belongs to the CarA family.
 
  
 0.856
Avi_3461
ABC transporter substrate binding protein (nitrate/sulfonate/taurine/bicarbonate).
 
    0.734
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.733
Avi_3458
ABC transporter nucleotide binding/ATPase protein (nitrate).
 
     0.712
pyrF
Orotidine 5prime-monophosphate; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
  
 0.711
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.