Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_0516 | Avi_2115 | Avi_0516 | Avi_2115 | Coenzyme A transferase. | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.914 |
Avi_0516 | mutA | Avi_0516 | Avi_5687 | Coenzyme A transferase. | methylmalonyl-CoA mutase. | 0.963 |
Avi_0516 | sdhA | Avi_0516 | Avi_4135 | Coenzyme A transferase. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.924 |
Avi_0516 | sdhB | Avi_0516 | Avi_4134 | Coenzyme A transferase. | Succinate dehydrogenase iron-sulfur; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.920 |
Avi_0516 | sdhC | Avi_0516 | Avi_4137 | Coenzyme A transferase. | Succinate dehydrogenase cytochrome B-556 subunit. | 0.907 |
Avi_0516 | sdhD | Avi_0516 | Avi_4136 | Coenzyme A transferase. | Succinate dehydrogenase hydrophobic membrane anchor. | 0.900 |
Avi_0516 | sucB | Avi_0516 | Avi_4121 | Coenzyme A transferase. | Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.914 |
Avi_0516 | sucC | Avi_0516 | Avi_4127 | Coenzyme A transferase. | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.948 |
Avi_0516 | sucD | Avi_0516 | Avi_4124 | Coenzyme A transferase. | succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.938 |
Avi_2115 | Avi_0516 | Avi_2115 | Avi_0516 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Coenzyme A transferase. | 0.914 |
Avi_2115 | mutA | Avi_2115 | Avi_5687 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | methylmalonyl-CoA mutase. | 0.839 |
Avi_2115 | sdhA | Avi_2115 | Avi_4135 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.663 |
Avi_2115 | sdhB | Avi_2115 | Avi_4134 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Succinate dehydrogenase iron-sulfur; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.698 |
Avi_2115 | sdhC | Avi_2115 | Avi_4137 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Succinate dehydrogenase cytochrome B-556 subunit. | 0.467 |
Avi_2115 | sucA | Avi_2115 | Avi_4122 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Oxoglutarate dehydrogenase E1 component. | 0.973 |
Avi_2115 | sucC | Avi_2115 | Avi_4127 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.953 |
Avi_2115 | sucD | Avi_2115 | Avi_4124 | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.948 |
mutA | Avi_0516 | Avi_5687 | Avi_0516 | methylmalonyl-CoA mutase. | Coenzyme A transferase. | 0.963 |
mutA | Avi_2115 | Avi_5687 | Avi_2115 | methylmalonyl-CoA mutase. | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.839 |
mutA | sdhA | Avi_5687 | Avi_4135 | methylmalonyl-CoA mutase. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.453 |
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