Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_3912 | Avi_5701 | Avi_3912 | Avi_5701 | Dehydrogenase. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.941 |
Avi_5694 | Avi_5701 | Avi_5694 | Avi_5701 | Conserved hypothetical protein. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.511 |
Avi_5700 | Avi_5701 | Avi_5700 | Avi_5701 | ABC transporter substrate binding protein (oligopeptide). | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.644 |
Avi_5701 | Avi_3912 | Avi_5701 | Avi_3912 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Dehydrogenase. | 0.941 |
Avi_5701 | Avi_5694 | Avi_5701 | Avi_5694 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Conserved hypothetical protein. | 0.511 |
Avi_5701 | Avi_5700 | Avi_5701 | Avi_5700 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | ABC transporter substrate binding protein (oligopeptide). | 0.644 |
Avi_5701 | Avi_5703 | Avi_5701 | Avi_5703 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Transcriptional regulator GntR family. | 0.621 |
Avi_5701 | dapB | Avi_5701 | Avi_0237 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.611 |
Avi_5701 | dapE-4 | Avi_5701 | Avi_5704 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Succinyl-diaminopimelate desuccinylase. | 0.480 |
Avi_5701 | garD | Avi_5701 | Avi_6103 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | D-galactarate dehydratase. | 0.918 |
Avi_5701 | gatC | Avi_5701 | Avi_1770 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | glutamyl-tRNA-Gln-amidotransferase chain C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.536 |
Avi_5701 | polA | Avi_5701 | Avi_0299 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.479 |
Avi_5701 | tyrA | Avi_5701 | Avi_4204 | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | Chorismate mutase. | 0.551 |
Avi_5703 | Avi_5701 | Avi_5703 | Avi_5701 | Transcriptional regulator GntR family. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.621 |
Avi_5703 | dapE-4 | Avi_5703 | Avi_5704 | Transcriptional regulator GntR family. | Succinyl-diaminopimelate desuccinylase. | 0.550 |
dapB | Avi_5701 | Avi_0237 | Avi_5701 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.611 |
dapB | polA | Avi_0237 | Avi_0299 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.569 |
dapE-4 | Avi_5701 | Avi_5704 | Avi_5701 | Succinyl-diaminopimelate desuccinylase. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.480 |
dapE-4 | Avi_5703 | Avi_5704 | Avi_5703 | Succinyl-diaminopimelate desuccinylase. | Transcriptional regulator GntR family. | 0.550 |
garD | Avi_5701 | Avi_6103 | Avi_5701 | D-galactarate dehydratase. | 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. | 0.918 |
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