STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaUL-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose. (107 aa)    
Predicted Functional Partners:
Avi_6271
Sugar kinase.
 
  
 0.985
Avi_6269
ABC transporter membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.925
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.915
rhaS
Rhamnose ABC transporter rhamnose-binding protein.
 
    0.882
Avi_6268
ABC transporter membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.878
xylB
Xylulokinase.
  
  
 0.844
rhaI
L-rhamnose catabolism isomerase.
 
   
 0.840
rbsA-5
ABC transporter nucleotide binding/ATPase protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
    0.821
Avi_6265
Transcriptional regulator DeoR family.
 
    0.819
Avi_5229
Xylulose kinase.
  
  
 0.715
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.