Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Arad_0567 | Arad_0725 | Arad_0567 | Arad_0725 | Oxidoreductase protein. | Oxidoreductase protein. | 0.911 |
Arad_0567 | Arad_4923 | Arad_0567 | Arad_4923 | Oxidoreductase protein. | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | 0.901 |
Arad_0567 | pdxH | Arad_0567 | Arad_1220 | Oxidoreductase protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.900 |
Arad_0725 | Arad_0567 | Arad_0725 | Arad_0567 | Oxidoreductase protein. | Oxidoreductase protein. | 0.911 |
Arad_0725 | Arad_4923 | Arad_0725 | Arad_4923 | Oxidoreductase protein. | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | 0.901 |
Arad_0725 | pdxH | Arad_0725 | Arad_1220 | Oxidoreductase protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.900 |
Arad_1219 | pdxH | Arad_1219 | Arad_1220 | Conserved hypothetical protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.572 |
Arad_4923 | Arad_0567 | Arad_4923 | Arad_0567 | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | Oxidoreductase protein. | 0.901 |
Arad_4923 | Arad_0725 | Arad_4923 | Arad_0725 | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | Oxidoreductase protein. | 0.901 |
Arad_4923 | pdxH | Arad_4923 | Arad_1220 | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.933 |
Arad_4923 | pdxJ | Arad_4923 | Arad_2885 | Pyridoxal kinase; Belongs to the pyridoxine kinase family. | Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.905 |
carB | pdxH | Arad_3135 | Arad_1220 | Carbamoyl-phosphate synthase large chain (ammonia chain) protein; Belongs to the CarB family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.551 |
carB | pyrB | Arad_3135 | Arad_1897 | Carbamoyl-phosphate synthase large chain (ammonia chain) protein; Belongs to the CarB family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carB | trpE | Arad_3135 | Arad_3255 | Carbamoyl-phosphate synthase large chain (ammonia chain) protein; Belongs to the CarB family. | Anthranilate synthase. | 0.498 |
gcvP | pdxH | Arad_2527 | Arad_1220 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.584 |
gcvP | pdxJ | Arad_2527 | Arad_2885 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.439 |
gcvP | sucA | Arad_2527 | Arad_4332 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 2-oxoglutarate dehydrogenase, E1 component. | 0.829 |
gcvP | trpE | Arad_2527 | Arad_3255 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Anthranilate synthase. | 0.415 |
pdxH | Arad_0567 | Arad_1220 | Arad_0567 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Oxidoreductase protein. | 0.900 |
pdxH | Arad_0725 | Arad_1220 | Arad_0725 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Oxidoreductase protein. | 0.900 |
page 1 of 2