STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (387 aa)    
Predicted Functional Partners:
ddlB
D-alanine-D-alanine ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.968
ddlA
D-alanine-D-alanine ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.967
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.948
murF
UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.948
alr-2
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 
0.911
dat
D-alanine aminotransferase protein.
    
 0.910
dat-2
D-alanine aminotransferase protein.
    
 0.910
ocdch1
Ornithine cyclodeaminase protein.
     
 0.809
ocdch2-2
Ornithine cyclodeaminase protein.
     
 0.809
Arad_8446
Ornithine cyclodeaminase protein.
     
 0.809
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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