STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpiA-2Triosephosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of L-erythrulose 1-phosphate to D-erythrulose 4- phosphate. (261 aa)    
Predicted Functional Partners:
rpiB
Ribose 5-phosphate isomerase protein; Involved in catabolism of D-apiose. Catalyzes the isomerization of D-erythrulose 4-phosphate to D-erythrose 4-phosphate.
 
  
 0.982
pgk
Phosphoglycerate kinase protein; Belongs to the phosphoglycerate kinase family.
 
 0.973
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 0.961
glpRb-3
Glycerol-3-phosphate transcriptional regulator protein.
 
   
 0.879
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
 
 
 0.863
Arad_7471
Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
 
 0.862
Arad_7457
D-erythrulose 4-phosphate dehydrogenase.
 
   
 0.859
smoC-2
Sorbitol/mannitol operon transcriptional regulator protein.
 
  
 0.851
pgi
Glucose-6-phosphate isomerase protein; Belongs to the GPI family.
  
 
 0.819
lyxX
L-xylulose kinase protein; Belongs to the FGGY kinase family.
 
  
 0.782
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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