STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arad_97045-dehydro-4-deoxyglucarate dehydratase protein; Belongs to the DapA family. (302 aa)    
Predicted Functional Partners:
Arad_4081
Aldehyde dehydrogenase protein.
 
 
 0.949
Arad_9702
Transcriptional regulator protein.
 
   
 0.708
uxuAch
Mannonate dehydratase protein; Catalyzes the dehydration of D-mannonate.
     
 0.659
dapB1
Dihydrodipicolinate reductase protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.640
Arad_9705
Exported protein.
       0.570
dapAch1
Dihydrodipicolinate synthase protein; Belongs to the DapA family.
  
   
 0.548
Arad_9474
Conserved hypothetical protein.
 
   
 0.519
dapAb
Dihydrodipicolinate synthase protein; Belongs to the DapA family.
  
     0.485
Arad_4411
Chorismate mutase.
  
  
 0.454
gatC
glutamyl-tRNA amidotransferase subunit C protein; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.438
Your Current Organism:
Agrobacterium radiobacter
NCBI taxonomy Id: 311403
Other names: A. radiobacter K84, Agrobacterium radiobacter K84, Agrobacterium radiobacter str. K84, Agrobacterium radiobacter strain K84, Agrobacterium rhizogenes K84, Agrobacterium tumefaciens K84, Rhizobium radiobacter K84
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