STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccS_2Inner membrane protein YccS. (678 aa)    
Predicted Functional Partners:
CTQ73714.1
SUF system FeS assembly protein, NifU family.
   
    0.799
CTQ77051.1
Hypothetical protein.
  
     0.738
CTQ77703.1
Hypothetical protein.
  
     0.738
CTQ68032.1
Polysaccharide pyruvyl transferase.
  
     0.711
CTQ67062.1
Putative protein with a bacterial SH3 domain homologue.
  
     0.671
CTQ66492.1
ATP-dependent transcriptional regulator.
  
     0.666
bepC_2
Outer membrane efflux protein BepC precursor.
 
  
 0.663
CTQ68049.1
Hypothetical protein.
  
     0.662
CTQ71212.1
Hypothetical protein.
  
     0.662
CTQ72383.1
Hypothetical protein.
  
     0.657
Your Current Organism:
Labrenzia alba
NCBI taxonomy Id: 311410
Other names: CECT 5095, CIP 108402, DSM 18380, L. alba, Labrenzia alba (Pujalte et al. 2006) Biebl et al. 2007, Stappia alba, Stappia alba Pujalte et al. 2006, strain 5OM6
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.