STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25144.1Transcriptional regulator, sugar-binding family protein; COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (314 aa)    
Predicted Functional Partners:
EAR25006.1
Conserved protein with kinase domain of diacylglycerol kinase; COG2376 Dihydroxyacetone kinase.
   
  0.917
EAR25145.1
Putative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
     
 0.802
EAR25146.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.768
EAR25147.1
COG1012 NAD-dependent aldehyde dehydrogenases.
       0.768
EAR25148.1
COG2340 Uncharacterized protein with SCP/PR1 domains.
       0.590
EAR25143.1
Possible sugar kinase; COG1940 Transcriptional regulator/sugar kinase.
       0.501
EAR25149.1
COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
       0.464
EAR24934.1
Oxidoreductase, putative; COG4091 Predicted homoserine dehydrogenase.
 
     0.453
EAR24938.1
PTS system, glucitol/sorbitol-specific enzyme II, C2 component; COG3730 Phosphotransferase system sorbitol-specific component IIC.
 
     0.413
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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