STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR25454.11,4-dihydroxy-2-naphthoate octaprenyltransferase; Belongs to the UbiA prenyltransferase family. (273 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.852
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
 0.846
EAR26192.1
Oxidoreductase; COG0644 Dehydrogenases (flavoproteins).
 
 
 0.840
EAR24364.1
COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
   
 
  0.834
EAR24048.1
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
     
 0.833
EAR26191.1
COG1755 Uncharacterized protein conserved in bacteria.
 
     0.762
EAR26190.1
Putative transferase; COG3424 Predicted naringenin-chalcone synthase.
 
     0.747
EAR26021.1
COG1562 Phytoene/squalene synthetase.
 
 
 0.629
EAR26020.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.625
atpD
ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.592
Your Current Organism:
actinobacterium PHSC20C1
NCBI taxonomy Id: 312284
Other names: m. actinobacterium PHSC20C1, marine actinobacterium PHSC20C1, marine actinobacterium str. PHSC20C1, marine actinobacterium strain PHSC20C1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.