STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrbDPredicted ABC-type organic solvent transporter. (164 aa)    
Predicted Functional Partners:
yrbE
Predicted toluene transporter subunit: membrane component of ABC superfamily.
 
 0.999
yrbF
Predicted toluene transporter subunit: ATP-binding component of ABC superfamily.
 
 0.998
yrbC
Predicted ABC-type organic solvent transporter.
 
 0.996
yrbB
Predicted NTP-binding protein.
  
 0.978
sypA
Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus.
  
   0.874
yrbA
Predicted DNA-binding transcriptional regulator; Belongs to the BolA/IbaG family.
     
 0.816
vacJ
VacJ lipoprotein.
 
   
 0.814
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.783
motB1
Flagellar motor protein MotB1.
   
   0.636
motB2
Flagellar motor protein MotB2.
   
   0.636
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.