Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0503 | VF_A0441 | VF_0503 | VF_A0441 | Hypothetical protein. | Hypothetical membrane spanning protein. | 0.596 |
VF_0503 | deoC | VF_0503 | VF_0504 | Hypothetical protein. | 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily. | 0.488 |
VF_0503 | mifC | VF_0503 | VF_A0960 | Hypothetical protein. | Periplasmic protein that regulates MifA/B activity. | 0.463 |
VF_0503 | yeiM | VF_0503 | VF_0502 | Hypothetical protein. | Predicted nucleoside transporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | 0.426 |
VF_A0441 | VF_0503 | VF_A0441 | VF_0503 | Hypothetical membrane spanning protein. | Hypothetical protein. | 0.596 |
VF_A0441 | mifC | VF_A0441 | VF_A0960 | Hypothetical membrane spanning protein. | Periplasmic protein that regulates MifA/B activity. | 0.449 |
deoC | VF_0503 | VF_0504 | VF_0503 | 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily. | Hypothetical protein. | 0.488 |
mifC | VF_0503 | VF_A0960 | VF_0503 | Periplasmic protein that regulates MifA/B activity. | Hypothetical protein. | 0.463 |
mifC | VF_A0441 | VF_A0960 | VF_A0441 | Periplasmic protein that regulates MifA/B activity. | Hypothetical membrane spanning protein. | 0.449 |
yeiM | VF_0503 | VF_0502 | VF_0503 | Predicted nucleoside transporter; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family. | Hypothetical protein. | 0.426 |