STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_0513General secretion pathway protein D; Belongs to the bacterial secretin family. (436 aa)    
Predicted Functional Partners:
tadC1
Bipartite nuclear localization signal containing protein; Similar to TadC.
 
  
 0.946
tadA1
Putative type IV secretion NTPase; Similar to TadA.
  
 0.945
tadB1
TadB-like protein involved in pilus formation and/or protein secretion.
 
  
 0.932
flp1
Flp pilus assembly protein CpaB family.
  
  
 0.898
VF_0515
ATPase involved in chromosome partitioning.
 
     0.875
tadC2
Bipartite nuclear localization signal containing protein; Similar to TadC.
 
  
 0.868
tadA2
Putative type IV secretion NTPase; Similar to TadA.
  
 0.864
VF_A0222
ATPase involved in chromosome partitioning.
 
  
 0.863
VF_0511
Hypothetical protein.
  
  
 0.834
VF_0510
Fimbrial protein precursor.
  
  
 0.829
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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