Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0991 | VF_0994 | VF_0991 | VF_0994 | Protein phosphatase 2C. | OmpA family protein. | 0.941 |
VF_0991 | VF_0995 | VF_0991 | VF_0995 | Protein phosphatase 2C. | Conserved hypothetical protein. | 0.931 |
VF_0991 | VF_0996 | VF_0991 | VF_0996 | Protein phosphatase 2C. | Probable lipoprotein. | 0.905 |
VF_0991 | VF_0997 | VF_0991 | VF_0997 | Protein phosphatase 2C. | Phospho-specific protein-protein interaction motif FHA. | 0.922 |
VF_0991 | VF_1000 | VF_0991 | VF_1000 | Protein phosphatase 2C. | Quinoprotein dehydrogenase. | 0.772 |
VF_0991 | VF_1001 | VF_0991 | VF_1001 | Protein phosphatase 2C. | Hypothetical protein. | 0.767 |
VF_0991 | VF_1003 | VF_0991 | VF_1003 | Protein phosphatase 2C. | Hypothetical protein. | 0.721 |
VF_0991 | VF_1004 | VF_0991 | VF_1004 | Protein phosphatase 2C. | Hypothetical cytosolic protein. | 0.654 |
VF_0991 | icmF | VF_0991 | VF_0993 | Protein phosphatase 2C. | Secretion protein IcmF. | 0.942 |
VF_0994 | VF_0991 | VF_0994 | VF_0991 | OmpA family protein. | Protein phosphatase 2C. | 0.941 |
VF_0994 | VF_0995 | VF_0994 | VF_0995 | OmpA family protein. | Conserved hypothetical protein. | 0.976 |
VF_0994 | VF_0996 | VF_0994 | VF_0996 | OmpA family protein. | Probable lipoprotein. | 0.984 |
VF_0994 | VF_0997 | VF_0994 | VF_0997 | OmpA family protein. | Phospho-specific protein-protein interaction motif FHA. | 0.953 |
VF_0994 | VF_1000 | VF_0994 | VF_1000 | OmpA family protein. | Quinoprotein dehydrogenase. | 0.935 |
VF_0994 | VF_1001 | VF_0994 | VF_1001 | OmpA family protein. | Hypothetical protein. | 0.957 |
VF_0994 | VF_1003 | VF_0994 | VF_1003 | OmpA family protein. | Hypothetical protein. | 0.979 |
VF_0994 | VF_1004 | VF_0994 | VF_1004 | OmpA family protein. | Hypothetical cytosolic protein. | 0.958 |
VF_0994 | VF_A0954 | VF_0994 | VF_A0954 | OmpA family protein. | Hemolysin co-regulated protein. | 0.819 |
VF_0994 | icmF | VF_0994 | VF_0993 | OmpA family protein. | Secretion protein IcmF. | 0.978 |
VF_0995 | VF_0991 | VF_0995 | VF_0991 | Conserved hypothetical protein. | Protein phosphatase 2C. | 0.931 |
page 1 of 6