Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0328 | znuB | VF_0328 | VF_0828 | Hypothetical protein. | Zinc transporter subunit: membrane component of ABC superfamily. | 0.449 |
VF_0328 | znuB2 | VF_0328 | VF_2368 | Hypothetical protein. | High-affinity zinc uptake system membrane protein ZnuB2. | 0.449 |
VF_0328 | znuC | VF_0328 | VF_0829 | Hypothetical protein. | Zinc transporter subunit: ATP-binding component of ABC superfamily; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.579 |
VF_0328 | znuC2 | VF_0328 | VF_2367 | Hypothetical protein. | High-affinity zinc uptake system ATP-binding protein ZnuC2; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.579 |
VF_0328 | zur | VF_0328 | VF_0306 | Hypothetical protein. | DNA-binding transcriptional repressor, Zn(II)-binding; Belongs to the Fur family. | 0.467 |
VF_2369 | yeiR | VF_2369 | VF_2370 | Carbonic anhydrase. | Predicted enzyme. | 0.841 |
VF_2369 | znuA2 | VF_2369 | VF_2366 | Carbonic anhydrase. | High-affinity zinc uptake system protein ZnuA2. | 0.428 |
VF_2369 | znuB2 | VF_2369 | VF_2368 | Carbonic anhydrase. | High-affinity zinc uptake system membrane protein ZnuB2. | 0.610 |
VF_2369 | znuC2 | VF_2369 | VF_2367 | Carbonic anhydrase. | High-affinity zinc uptake system ATP-binding protein ZnuC2; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.610 |
ubiB | znuC2 | VF_0048 | VF_2367 | 2-octaprenylphenol hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | High-affinity zinc uptake system ATP-binding protein ZnuC2; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.406 |
yeiR | VF_2369 | VF_2370 | VF_2369 | Predicted enzyme. | Carbonic anhydrase. | 0.841 |
yeiR | znuA2 | VF_2370 | VF_2366 | Predicted enzyme. | High-affinity zinc uptake system protein ZnuA2. | 0.485 |
yeiR | znuB2 | VF_2370 | VF_2368 | Predicted enzyme. | High-affinity zinc uptake system membrane protein ZnuB2. | 0.658 |
yeiR | znuC2 | VF_2370 | VF_2367 | Predicted enzyme. | High-affinity zinc uptake system ATP-binding protein ZnuC2; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.655 |
znuA | znuA2 | VF_0830 | VF_2366 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | High-affinity zinc uptake system protein ZnuA2. | 0.921 |
znuA | znuB | VF_0830 | VF_0828 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | Zinc transporter subunit: membrane component of ABC superfamily. | 0.993 |
znuA | znuB2 | VF_0830 | VF_2368 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | High-affinity zinc uptake system membrane protein ZnuB2. | 0.973 |
znuA | znuC | VF_0830 | VF_0829 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | Zinc transporter subunit: ATP-binding component of ABC superfamily; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.995 |
znuA | znuC2 | VF_0830 | VF_2367 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | High-affinity zinc uptake system ATP-binding protein ZnuC2; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.979 |
znuA | zur | VF_0830 | VF_0306 | Zinc transporter subunit: periplasmic-binding component of ABC superfamily; Belongs to the bacterial solute-binding protein 9 family. | DNA-binding transcriptional repressor, Zn(II)-binding; Belongs to the Fur family. | 0.479 |
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