JNB_02660 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_02660

Uncharacterized protein (198 aa)

Predicted Functional Partners:

JNB_03815

0.884

JNB_02650

0.817

JNB_19038

0.776

JNB_07334

0.770

JNB_02645

0.767

JNB_18738

0.767

JNB_05110

0.757

pheT

0.756

JNB_01795

0.753

rpoZ

0.748

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JNB_01795	JNB_02660	JNB_01795	JNB_02660	Uncharacterized protein	Uncharacterized protein	0.753
JNB_01795	JNB_05110	JNB_01795	JNB_05110	Uncharacterized protein	Putative DNA-binding protein	0.605
JNB_01795	JNB_07334	JNB_01795	JNB_07334	Uncharacterized protein	Uncharacterized protein	0.764
JNB_01795	JNB_18738	JNB_01795	JNB_18738	Uncharacterized protein	Transcriptional regulator WhiB ; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	0.772
JNB_01795	JNB_19038	JNB_01795	JNB_19038	Uncharacterized protein	Transcriptional regulator WhiB ; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	0.776
JNB_01795	rpoZ	JNB_01795	JNB_03985	Uncharacterized protein	Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits	0.776
JNB_02645	JNB_02650	JNB_02645	JNB_02650	Uncharacterized protein	Uncharacterized protein	0.918
JNB_02645	JNB_02660	JNB_02645	JNB_02660	Uncharacterized protein	Uncharacterized protein	0.767
JNB_02645	rpoZ	JNB_02645	JNB_03985	Uncharacterized protein	Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits	0.676
JNB_02650	JNB_02645	JNB_02650	JNB_02645	Uncharacterized protein	Uncharacterized protein	0.918
JNB_02650	JNB_02660	JNB_02650	JNB_02660	Uncharacterized protein	Uncharacterized protein	0.817
JNB_02650	JNB_03815	JNB_02650	JNB_03815	Uncharacterized protein	Putative glutamate synthase (NADPH) large subunit	0.884
JNB_02650	JNB_07334	JNB_02650	JNB_07334	Uncharacterized protein	Uncharacterized protein	0.508
JNB_02650	pheT	JNB_02650	JNB_04385	Uncharacterized protein	Phenylalanyl-tRNA synthetase beta subunit	0.611
JNB_02660	JNB_01795	JNB_02660	JNB_01795	Uncharacterized protein	Uncharacterized protein	0.753
JNB_02660	JNB_02645	JNB_02660	JNB_02645	Uncharacterized protein	Uncharacterized protein	0.767
JNB_02660	JNB_02650	JNB_02660	JNB_02650	Uncharacterized protein	Uncharacterized protein	0.817
JNB_02660	JNB_03815	JNB_02660	JNB_03815	Uncharacterized protein	Putative glutamate synthase (NADPH) large subunit	0.884
JNB_02660	JNB_05110	JNB_02660	JNB_05110	Uncharacterized protein	Putative DNA-binding protein	0.757
JNB_02660	JNB_07334	JNB_02660	JNB_07334	Uncharacterized protein	Uncharacterized protein	0.770

page 1 of 4

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2017

Credits

Access

Info

About