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sbcD protein (Janibacter sp. HTCC2649) - STRING interaction network
"sbcD" - Nuclease SbcCD subunit D in Janibacter sp. HTCC2649
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcDNuclease SbcCD subunit D ; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (390 aa)    
Predicted Functional Partners:
sbcC
Nuclease SbcCD subunit C ; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (1047 aa)
 
  0.999
JNB_03775
DNA polymerase (889 aa)
   
  0.975
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (354 aa)
   
  0.917
JNB_05994
ATP-dependent DNA helicase (707 aa)
   
  0.884
JNB_02890
Putative 5’-3’ exonuclease (333 aa)
   
  0.879
JNB_02045
DNA ligase (713 aa)
   
  0.847
JNB_16664
DNA ligase (112 aa)
     
  0.844
JNB_13733
DNA ligase (319 aa)
     
  0.844
JNB_12284
DNA ligase (539 aa)
     
  0.844
JNB_09554
ATPase (379 aa)
     
  0.832
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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