Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but resolution at 400 dpi
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as simple tabular text output:
TSV: tab separated values - can be opened in Excel
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JNB_00705 | JNB_03775 | JNB_00705 | JNB_03775 | DNA-directed DNA polymerase | DNA polymerase | 0.979 |
JNB_00705 | JNB_13948 | JNB_00705 | JNB_13948 | DNA-directed DNA polymerase | Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity | 0.614 |
JNB_00705 | dnaA | JNB_00705 | JNB_13408 | DNA-directed DNA polymerase | Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids | 0.695 |
JNB_00705 | dnaG | JNB_00705 | JNB_04760 | DNA-directed DNA polymerase | DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.844 |
JNB_00705 | recR | JNB_00705 | JNB_10169 | DNA-directed DNA polymerase | Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO | 0.692 |
JNB_00705 | sigA | JNB_00705 | JNB_00580 | DNA-directed DNA polymerase | RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.502 |
JNB_00705 | smpB | JNB_00705 | JNB_06569 | DNA-directed DNA polymerase | Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] | 0.492 |
JNB_03775 | JNB_00705 | JNB_03775 | JNB_00705 | DNA polymerase | DNA-directed DNA polymerase | 0.979 |
JNB_03775 | JNB_13948 | JNB_03775 | JNB_13948 | DNA polymerase | Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity | 0.666 |
JNB_03775 | dnaA | JNB_03775 | JNB_13408 | DNA polymerase | Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids | 0.810 |
JNB_03775 | dnaG | JNB_03775 | JNB_04760 | DNA polymerase | DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.757 |
JNB_03775 | recR | JNB_03775 | JNB_10169 | DNA polymerase | Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO | 0.750 |
JNB_03775 | rph | JNB_03775 | JNB_06259 | DNA polymerase | tRNA nucleotidyltransferase ; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates | 0.444 |
JNB_03775 | ruvB | JNB_03775 | JNB_02455 | DNA polymerase | Holliday junction ATP-dependent DNA helicase RuvB ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing | 0.770 |
JNB_03775 | sigA | JNB_03775 | JNB_00580 | DNA polymerase | RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.723 |
JNB_03775 | smpB | JNB_03775 | JNB_06569 | DNA polymerase | Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] | 0.470 |
JNB_04755 | dnaG | JNB_04755 | JNB_04760 | DNA primase | DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.913 |
JNB_13948 | JNB_00705 | JNB_13948 | JNB_00705 | Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity | DNA-directed DNA polymerase | 0.614 |
JNB_13948 | JNB_03775 | JNB_13948 | JNB_03775 | Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity | DNA polymerase | 0.666 |
JNB_13948 | dnaA | JNB_13948 | JNB_13408 | Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity | Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids | 0.937 |
page 1 of 4