STRINGSTRING
JNB_06479 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_06479" - Uncharacterized protein in Janibacter sp. HTCC2649
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_06479Uncharacterized protein (586 aa)    
Predicted Functional Partners:
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (87 aa)
     
    0.888
JNB_05115
Putative ATP-dependent helicase (761 aa)
     
  0.858
JNB_03775
DNA polymerase (889 aa)
 
  0.825
JNB_02890
Putative 5’-3’ exonuclease (333 aa)
   
  0.786
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (346 aa)
     
    0.776
JNB_05030
Uncharacterized protein (290 aa)
   
          0.774
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1297 aa)
     
  0.770
JNB_07399
DNA helicase (729 aa)
 
 
  0.721
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1162 aa)
     
  0.710
JNB_16284
UPF0678 fatty acid-binding protein-like protein JNB_16284 ; May play a role in the intracellular transport of hydrophobic ligands (169 aa)
   
          0.699
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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