STRINGSTRING
JNB_06574 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_06574" - Uncharacterized protein in Janibacter sp. HTCC2649
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_06574Uncharacterized protein (429 aa)    
Predicted Functional Partners:
JNB_06584
ATPase (232 aa)
 
          0.746
JNB_06579
Cell division protein FtsX ; Part of the ABC transporter FtsEX involved in cellular division (301 aa)
     
      0.724
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (164 aa)
   
   
  0.685
JNB_13593
Putative secreted penicillin-binding protein (741 aa)
   
   
  0.668
JNB_17448
Beta-N-acetylhexosaminidase (329 aa)
 
   
  0.664
JNB_09694
Uncharacterized protein (632 aa)
 
   
  0.661
JNB_10834
Putative beta-N-acetylhexosaminidase (522 aa)
 
   
  0.650
JNB_18888
Beta-N-acetylhexosaminidase (617 aa)
 
   
  0.644
JNB_10259
Beta-N-acetylglucosaminidase (Putative secreted protein) (601 aa)
 
   
  0.641
JNB_10109
Putative transpeptidase (811 aa)
   
   
  0.580
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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