JNB_07534 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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Score

JNB_07534

Putative RNA polymerase sigma factor (176 aa)

Predicted Functional Partners:

JNB_07539

0.859

JNB_07529

0.640

JNB_16821

0.632

JNB_15818

0.556

JNB_06384

0.547

JNB_11484

0.457

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
JNB_06384	JNB_07534	Putative RNA polymerase ECF-subfamily sigma factor	Putative RNA polymerase sigma factor	0.547
JNB_06384	JNB_11484	Putative RNA polymerase ECF-subfamily sigma factor	RNA polymerase sigma factor	0.440
JNB_07529	JNB_07534	Uncharacterized protein	Putative RNA polymerase sigma factor	0.640
JNB_07529	JNB_07539	Uncharacterized protein	Uncharacterized protein	0.640
JNB_07534	JNB_06384	Putative RNA polymerase sigma factor	Putative RNA polymerase ECF-subfamily sigma factor	0.547
JNB_07534	JNB_07529	Putative RNA polymerase sigma factor	Uncharacterized protein	0.640
JNB_07534	JNB_07539	Putative RNA polymerase sigma factor	Uncharacterized protein	0.859
JNB_07534	JNB_11484	Putative RNA polymerase sigma factor	RNA polymerase sigma factor	0.457
JNB_07534	JNB_15818	Putative RNA polymerase sigma factor	RNA polymerase sigma factor	0.556
JNB_07534	JNB_16821	Putative RNA polymerase sigma factor	RNA polymerase sigma factor	0.632
JNB_07539	JNB_07529	Uncharacterized protein	Uncharacterized protein	0.640
JNB_07539	JNB_07534	Uncharacterized protein	Putative RNA polymerase sigma factor	0.859
JNB_11484	JNB_06384	RNA polymerase sigma factor	Putative RNA polymerase ECF-subfamily sigma factor	0.440
JNB_11484	JNB_07534	RNA polymerase sigma factor	Putative RNA polymerase sigma factor	0.457
JNB_15818	JNB_07534	RNA polymerase sigma factor	Putative RNA polymerase sigma factor	0.556
JNB_16821	JNB_07534	RNA polymerase sigma factor	Putative RNA polymerase sigma factor	0.632

Network

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Cooccurrence

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Fusion

Textmining

Coexpression

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